1. An Y, Zhao X, Zhang Z, Xia Z, Yang M, Ma L, Zhao Y, Xu G, Du S, Wu X, Zhang S, Hong X, Jin X*,Sun K*. DNA methylation analysis explores the molecular basis of plasma cell-free DNA fragmentation.Nat Commun2023 Jan 18; 14(1):287.

2. Jiang P#,Sun K#, Peng W#, Cheng SH, Ni M, Yeung PC, Heung MMS, Xie T, Shang H, Zhou Z, Chan RWY, Wong J, Wong VWS, Poon LC, Leung TY, Lam WKJ, Chan JYK, Chan HLY, Chan KCA, Chiu RWK, Lo YMD. Plasma DNA end motif profiling as a fragmentomic marker in cancer, pregnancy and transplantation.Cancer Discov2020 May; 10(5):664-673.

3.Sun K*, Jiang P, Cheng SH, Cheng THT, Wong J, Wong VWS, Ng SSM, Ma BBY, Leung TY, Chan SL, Mok TSK, Lai PBS, Chan HLY, Sun H, Chan KCA, Chiu RWK, Lo YMD*. Orientation-aware plasma cell-free DNA fragmentation analysis in open chromatin regions informs tissue of origin.Genome Res2019 Mar; 29(3):418-427.

4.Sun K, Jiang P, Wong AIC, Cheng YKY, Cheng SH, Zhang H, Chan KCA, Leung TY, Chiu RWK, Lo YMD. Size-tagged preferred ends in maternal plasma DNA shed light on production mechanism and show utility in noninvasive prenatal testing.Proc Natl Acad Sci U S A2018 May 29; 115(22):E5106-E5114.

5. Jiang P#,Sun K#, Tong YK, Cheng SH, Cheng THT, Heung MMS, Wong J, Wong VWS, Chan HLY, Chan KCA, Lo YMD, Chiu RWK. Preferred end coordinates and somatic variants as signatures of circulating tumor DNA associated with hepatocellular carcinoma.Proc Natl Acad Sci U S A2018 Nov 13; 115(46):E10925-E10933.

6. Chan KCA#, Jiang P#,Sun K#, Cheng YKY, Tong YK, Cheng SH, Wong AIC, Hudecova I, Leung TY, Chiu RWK, Lo YMD. Second generation noninvasive fetal genome analysis reveals de novo mutations, single-base parental inheritance and preferred DNA ends.Proc Natl Acad Sci U S A2016 Dec 13; 113(50):E8159-8168.

7.Sun K#, Jiang P#, Chan KCA#, Wong J, Cheng YK, Liang RH, Chan WK, Ma ES, Chan SL, Cheng SH, Chan RW, Tong YK, Ng SS, Mong RSM, Hui DS, Leung TN, Leung TY, Lai PBS, Chiu RWK, Lo YMD. Plasma DNA tissue mapping by genomewide methylation sequencing for noninvasive prenatal, cancer and transplantation assessments.Proc Natl Acad Sci U S A2015 Oct 6; 112(40):E5503-12.

8.Sun K*, Wang H, Sun H*. NAMS webserver: coding potential assessment and functional annotation of plant transcripts.Brief Bioinform2021 May 20; 22(3):bbaa200.

9.Sun K*, Li L, Ma L, Zhao Y, Deng L, Wang H, Sun H. Msuite: a high-performance and versatile DNA methylation data-analysis toolkit.Patterns (N Y)2020 Oct 15; 1(8):100127.

10. Zhou L#,Sun K#, Zhao Y#, Zhang S, Wang X, Li Y, Lu L, Chen X, Chen F, Bao X, Zhu X, Wang L, Tang LY, Esteban MA, Wang R, Jauch R, Sun H, Wang H. Linc-YY1 promotes myogenic differentiation and muscle regeneration through an interaction with the transcription factor YY1.Nat Commun2015 Dec 11; 6:10026.

11. Lu L#,Sun K#, Chen X, Zhao Y, Wang L, Zhou L, Sun H, Wang H. Genome-wide survey by ChIP-seq reveals YY1 regulation of lincRNAs in skeletal myogenesis.EMBO J2013 Oct 2; 32(19):2575-88.

12. Chan KCA#, Jiang P#,Sun K#, Cheng YKY, Tong YK, Cheng SH, Wong AIC, Hudecova I, Leung TY, Chiu RWK, Lo YMD. Second generation noninvasive fetal genome analysis reveals de novo mutations, single-base parental inheritance and preferred DNA ends.Proc Natl Acad Sci U S A2016 Dec 13; 113(50):E8159-8168.

13.Sun K#, Jiang P#, Chan KCA#, Wong J, Cheng YK, Liang RH, Chan WK, Ma ES, Chan SL, Cheng SH, Chan RW, Tong YK, Ng SS, Mong RSM, Hui DS, Leung TN, Leung TY, Lai PBS, Chiu RWK, Lo YMD. Plasma DNA tissue mapping by genomewide methylation sequencing for noninvasive prenatal, cancer and transplantation assessments.Proc Natl Acad Sci U S A2015 Oct 6; 112(40):E5503-12.

14. Zhou L#,Sun K#, Zhao Y#, Zhang S, Wang X, Li Y, Lu L, Chen X, Chen F, Bao X, Zhu X, Wang L, Tang LY, Esteban MA, Wang R, Jauch R, Sun H, Wang H. Linc-YY1 promotes myogenic differentiation and muscle regeneration through an interaction with the transcription factor YY1.Nat Commun2015 Dec 11; 6:10026.

15. Lu L#,Sun K#, Chen X, Zhao Y, Wang L, Zhou L, Sun H, Wang H. Genome-wide survey by ChIP-seq reveals YY1 regulation of lincRNAs in skeletal myogenesis.EMBO J2013 Oct 2; 32(19):2575-88.